libxml2: 2.12.7 → 2.13.2 #326637

jtojnar · 2024-07-12T19:37:51Z

Description of changes

Supersedes #319982, #324629

Things done

Add a 👍 reaction to pull requests you find important.

- new API with per-context error handlers - remove HTTP POST support - zlib, lzma and HTTP disabled by default → removed `zlib` - Meson support added → cycle, not switching right now - docs no longer install examples and tutorial was removed → since only `xmllint` and `xmlcatalog` HTML docs remain, move them to `out` - FTP and `xpointer()` XPath extensions deprecated https://discourse.gnome.org/t/libxml2-2-12-8-released/21528 https://discourse.gnome.org/t/libxml2-2-13-0-released/21529 https://discourse.gnome.org/t/libxml2-2-13-1-released/21778 https://discourse.gnome.org/t/libxml2-2-13-2-released/22000 Also clean up the expression a bit and install DevHelp files to `devdoc` (previously deleted by multiple-outputs hook).

https://discourse.gnome.org/t/libxslt-1-1-42-released/22001

trofi · 2024-07-18T08:37:36Z

Bisect says 25bc618 libxml2: 2.12.7 → 2.13.2 broke colord build in staging as:

ERROR: Error in gtkdoc helper script:

ERROR: ['/nix/store/3bjl4a6x553igz8av394afjlb9r85p9z-gtk-doc-1.34.0/bin/gtkdoc-mkhtml', '--path=/build/colord-1.4.6/doc/api:/build/colord-1.4.6/build/doc/api', 'colord', '../colord-docs.xml'] failed with status 6
warning: failed to load external entity "../../../COPYING"

jtojnar · 2024-07-18T15:22:11Z

@trofi that sounds like an issue with the build system. Looking at the code, the path refers to build/copying since Meson does out-of-tree builds:

https://github.com/hughsie/colord/blob/4a5a8ac167f940d74b4ac6e3f588bd50b8b777ea/doc/api/colord-docs.xml#L107

The following appears to fix it:

substituteInPlace doc/api/colord-docs.xml --replace-fail "../../COPYING" "../../../COPYING"

But that is not upstreamable since build directory location is configurable.

Also for some reason, the warning actually shows correct relative path (one higher than used).

And it is not clear to me why it fails when there is a xinclude fallback.

jtojnar · 2024-07-18T15:24:54Z

~~Actually, might be the same as https://gitlab.gnome.org/GNOME/libxml2/-/issues/733 that affected systemd docs. We should probably backport that.~~ Edit: Those are part of 2.13.2.

jtojnar · 2024-07-18T15:46:38Z

Opened new upstream issue: https://gitlab.gnome.org/GNOME/libxml2/-/issues/772

trofi · 2024-07-18T16:45:27Z

Looks like librdf_raptor2 is also affected by the same 25bc618 libxml2: 2.12.7 → 2.13.2 on staging:

$ nix build --no-link -f. -L librdf_raptor2
...
raptor2-unstable> /build/source/src/raptor_www_libxml.c: In function 'raptor_www_libxml_init':
raptor2-unstable> /build/source/src/raptor_www_libxml.c:43:3: warning: implicit declaration of function 'xmlNanoHTTPInit' [8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration8;;]
raptor2-unstable>    43 |   xmlNanoHTTPInit();
raptor2-unstable>       |   ^~~~~~~~~~~~~~~
...
raptor2-unstable> /nix/store/2qnz8ch0m3vjgjmjy8g66ik1rrm560ki-binutils-2.42/bin/ld: libraptor2.so: undefined reference to `xmlNanoHTTPScanProxy'
raptor2-unstable> /nix/store/2qnz8ch0m3vjgjmjy8g66ik1rrm560ki-binutils-2.42/bin/ld: libraptor2.so: undefined reference to `xmlNanoHTTPClose'
raptor2-unstable> /nix/store/2qnz8ch0m3vjgjmjy8g66ik1rrm560ki-binutils-2.42/bin/ld: libraptor2.so: undefined reference to `xmlNanoHTTPReturnCode'
raptor2-unstable> /nix/store/2qnz8ch0m3vjgjmjy8g66ik1rrm560ki-binutils-2.42/bin/ld: libraptor2.so: undefined reference to `xmlNanoHTTPRead'
raptor2-unstable> /nix/store/2qnz8ch0m3vjgjmjy8g66ik1rrm560ki-binutils-2.42/bin/ld: libraptor2.so: undefined reference to `xmlNanoHTTPCleanup'
raptor2-unstable> /nix/store/2qnz8ch0m3vjgjmjy8g66ik1rrm560ki-binutils-2.42/bin/ld: libraptor2.so: undefined reference to `xmlNanoHTTPMethod'
raptor2-unstable> /nix/store/2qnz8ch0m3vjgjmjy8g66ik1rrm560ki-binutils-2.42/bin/ld: libraptor2.so: undefined reference to `xmlNanoHTTPInit'
raptor2-unstable> collect2: error: ld returned 1 exit status
raptor2-unstable> make[2]: *** [src/CMakeFiles/raptor_uri_test.dir/build.make:100: src/raptor_uri_test] Error 1

nwellnhof · 2024-07-18T17:50:01Z

raptor2-unstable> /build/source/src/raptor_www_libxml.c:43:3: warning: implicit declaration of function 'xmlNanoHTTPInit' [8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration8;;]
raptor2-unstable>    43 |   xmlNanoHTTPInit();

You either have to build libxml2 with HTTP or legacy support or build raptor without "www" support.

jtojnar · 2024-07-18T18:40:31Z

Fixing libraptor in #328243

Tried to apply the patch with libxml2 fix but that breaks tests: https://gitlab.gnome.org/GNOME/libxml2/-/issues/772#note_2171538

trofi · 2024-07-18T20:01:15Z

postgresql is also affected by 25bc618 libxml2: 2.12.7 → 2.13.2 in staging:

$ nix build --no-link -f. -L postgresql
...
postgresql>      xml                          ... FAILED      179 ms
...
postgresql> make: *** [GNUmakefile:69: check] Error 2
error: builder for '/nix/store/gvx4dp3zzq14ra5cxkfr0bh6j8jaaqax-postgresql-15.7.drv' failed with exit code 2;

jtojnar · 2024-07-18T20:56:24Z

That might be fixed by postgres/postgres@e719248
Possibly also postgres/postgres@896cd26 for future proofing.

nwellnhof · 2024-07-18T21:40:00Z

For Postgres, you might also need this libxml2 commit from the 2.13 branch: https://gitlab.gnome.org/GNOME/libxml2/-/commit/e30cb632e734394ddbd7bd62b57cee3586424352

There will be a 2.13.3 release next week.

/cc PR #326637

vcunat · 2024-07-25T07:04:39Z

libspatialite: it's missing zlib right now but mainly it's missing the libxml2 http API.
```
[...]/libspatialite.so: undefined reference to `xmlNanoHTTPCleanup'
```
/cc maintainers (subset for now): @dotlambda, @imincik
[staging-next] Fix libspatialite build #330337

imincik · 2024-07-29T10:27:57Z

libspatialite: it's missing zlib right now but mainly it's missing the libxml2 http API.
[...]/libspatialite.so: undefined reference to `xmlNanoHTTPCleanup'
/cc maintainers (subset for now): @dotlambda, @imincik
[staging-next] Fix libspatialite build #330337

Sorry, just returned from vacation. Thanks for fix.

kirillrdy · 2024-07-30T22:04:21Z

there is also postgis failure

#331166

jtojnar · 2024-08-25T23:15:27Z

For some reason 25bc618 is the first bad commit causing runtime issues in mysqlnd PHP extensions:

$ nix-build --expr 'let pkgs = import ./. {}; in pkgs.php.withExtensions ({ all, ... }: [ all.mysqlnd ])' && result/bin/php -i | grep Warning
/nix/store/m8s2xh98lx9n30jx256qw79hfpdnx2sk-php-with-extensions-8.2.21
Warning: PHP Startup: Unable to load dynamic library '/nix/store/4gz4xg5g4j2i7yq1qsnq4sp63dmyl5s0-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so' (tried: /nix/store/4gz4xg5g4j2i7yq1qsnq4sp63dmyl5s0-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so (/nix/store/4gz4xg5g4j2i7yq1qsnq4sp63dmyl5s0-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so: undefined symbol: compress), /nix/store/qh0311v3hwbbd8mf15kv3zmz91hq4d1c-php-8.2.21/lib/php/extensions//nix/store/4gz4xg5g4j2i7yq1qsnq4sp63dmyl5s0-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so.so (/nix/store/qh0311v3hwbbd8mf15kv3zmz91hq4d1c-php-8.2.21/lib/php/extensions//nix/store/4gz4xg5g4j2i7yq1qsnq4sp63dmyl5s0-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so.so: cannot open shared object file: No such file or directory)) in Unknown on line 0

$ nix-build --expr 'let pkgs = import ./. {}; in pkgs.php.withExtensions ({ all, ... }: [ all.mysqli ])' && result/bin/php -i | grep Warning
/nix/store/78nn66mdmvqry6x3nv960w4rjaz6rf19-php-with-extensions-8.2.21
Warning: PHP Startup: Unable to load dynamic library '/nix/store/4gz4xg5g4j2i7yq1qsnq4sp63dmyl5s0-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so' (tried: /nix/store/4gz4xg5g4j2i7yq1qsnq4sp63dmyl5s0-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so (/nix/store/4gz4xg5g4j2i7yq1qsnq4sp63dmyl5s0-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so: undefined symbol: compress), /nix/store/qh0311v3hwbbd8mf15kv3zmz91hq4d1c-php-8.2.21/lib/php/extensions//nix/store/4gz4xg5g4j2i7yq1qsnq4sp63dmyl5s0-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so.so (/nix/store/qh0311v3hwbbd8mf15kv3zmz91hq4d1c-php-8.2.21/lib/php/extensions//nix/store/4gz4xg5g4j2i7yq1qsnq4sp63dmyl5s0-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so.so: cannot open shared object file: No such file or directory)) in Unknown on line 0
Warning: PHP Startup: Unable to load dynamic library '/nix/store/47v522nby5yhg5dm70qb1dld0jwv29xg-php-mysqli-8.2.21/lib/php/extensions/mysqli.so' (tried: /nix/store/47v522nby5yhg5dm70qb1dld0jwv29xg-php-mysqli-8.2.21/lib/php/extensions/mysqli.so (/nix/store/47v522nby5yhg5dm70qb1dld0jwv29xg-php-mysqli-8.2.21/lib/php/extensions/mysqli.so: undefined symbol: mysqlnd_global_stats), /nix/store/qh0311v3hwbbd8mf15kv3zmz91hq4d1c-php-8.2.21/lib/php/extensions//nix/store/47v522nby5yhg5dm70qb1dld0jwv29xg-php-mysqli-8.2.21/lib/php/extensions/mysqli.so.so (/nix/store/qh0311v3hwbbd8mf15kv3zmz91hq4d1c-php-8.2.21/lib/php/extensions//nix/store/47v522nby5yhg5dm70qb1dld0jwv29xg-php-mysqli-8.2.21/lib/php/extensions/mysqli.so.so: cannot open shared object file: No such file or directory)) in Unknown on line 0

cc @NixOS/php

Edit: Tried to re-add the propagation of zlib in case it was the issue but no luck:

$ nix-build --expr 'let pkgs = import ./. { overlays = [ (final: prev: { libxml2 = prev.libxml2.overrideAttrs (attrs: { propagatedBuildInputs = [prev.zlib]; }); }) ]; }; in pkgs.php.withExtensions ({ all, ... }: [ all.mysqlnd ])' && result/bin/php -i | grep Warning
/nix/store/xp8f9fgd1159wdi20fwwkznlz7z8lb77-php-with-extensions-8.2.21
Warning: PHP Startup: Unable to load dynamic library '/nix/store/z7jda5b5269wy85n2x2hjr35alc0jz4f-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so' (tried: /nix/store/z7jda5b5269wy85n2x2hjr35alc0jz4f-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so (/nix/store/z7jda5b5269wy85n2x2hjr35alc0jz4f-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so: undefined symbol: compress), /nix/store/sxw3pmri2vbl9kfdh0772kfwjpz2kchv-php-8.2.21/lib/php/extensions//nix/store/z7jda5b5269wy85n2x2hjr35alc0jz4f-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so.so (/nix/store/sxw3pmri2vbl9kfdh0772kfwjpz2kchv-php-8.2.21/lib/php/extensions//nix/store/z7jda5b5269wy85n2x2hjr35alc0jz4f-php-mysqlnd-8.2.21/lib/php/extensions/mysqlnd.so.so: cannot open shared object file: No such file or directory)) in Unknown on line 0

Edit: I forgot symbols use a single namespace, resolved in #337380.

jtojnar added 2 commits July 12, 2024 21:36

libxslt: 1.1.41 → 1.1.42

9634d9c

https://discourse.gnome.org/t/libxslt-1-1-42-released/22001

jtojnar changed the base branch from master to staging July 12, 2024 19:40

ofborg bot added the 10.rebuild-darwin-stdenv This PR causes stdenv to rebuild label Jul 13, 2024

ofborg bot requested a review from edolstra July 13, 2024 00:02

ofborg bot added 11.by: package-maintainer This PR was created by the maintainer of the package it changes 10.rebuild-darwin: 501+ 10.rebuild-darwin: 5001+ 10.rebuild-linux: 501+ 10.rebuild-linux: 5001+ labels Jul 13, 2024

jtojnar merged commit 256178a into staging Jul 13, 2024
36 of 38 checks passed

jtojnar deleted the libxml2 branch July 13, 2024 10:53

jtojnar mentioned this pull request Jul 18, 2024

libxml2: Fix XInclude failure handling #328261

Merged

14 tasks

vcunat added a commit that referenced this pull request Jul 20, 2024

libxml2: pull yet another upstream patch

145c73b

/cc PR #326637

vcunat added a commit that referenced this pull request Jul 21, 2024

postgresql_*: upstream patches to support libxml2-2.13

3f0fd42

/cc PR #326637

jtojnar mentioned this pull request Aug 26, 2024

php84: init at 8.4.0beta3 fossar/nix-phps#355

Merged

4 tasks

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

libxml2: 2.12.7 → 2.13.2 #326637

libxml2: 2.12.7 → 2.13.2 #326637

jtojnar commented Jul 12, 2024 •

edited

Loading

trofi commented Jul 18, 2024

jtojnar commented Jul 18, 2024

jtojnar commented Jul 18, 2024 •

edited

Loading

jtojnar commented Jul 18, 2024

trofi commented Jul 18, 2024 •

edited

Loading

nwellnhof commented Jul 18, 2024

jtojnar commented Jul 18, 2024

trofi commented Jul 18, 2024

jtojnar commented Jul 18, 2024

nwellnhof commented Jul 18, 2024

vcunat commented Jul 25, 2024 •

edited

Loading

imincik commented Jul 29, 2024

kirillrdy commented Jul 30, 2024

jtojnar commented Aug 25, 2024 •

edited

Loading

libxml2: 2.12.7 → 2.13.2 #326637

libxml2: 2.12.7 → 2.13.2 #326637

Conversation

jtojnar commented Jul 12, 2024 • edited Loading

Description of changes

Things done

trofi commented Jul 18, 2024

jtojnar commented Jul 18, 2024

jtojnar commented Jul 18, 2024 • edited Loading

jtojnar commented Jul 18, 2024

trofi commented Jul 18, 2024 • edited Loading

nwellnhof commented Jul 18, 2024

jtojnar commented Jul 18, 2024

trofi commented Jul 18, 2024

jtojnar commented Jul 18, 2024

nwellnhof commented Jul 18, 2024

vcunat commented Jul 25, 2024 • edited Loading

imincik commented Jul 29, 2024

kirillrdy commented Jul 30, 2024

jtojnar commented Aug 25, 2024 • edited Loading

jtojnar commented Jul 12, 2024 •

edited

Loading

jtojnar commented Jul 18, 2024 •

edited

Loading

trofi commented Jul 18, 2024 •

edited

Loading

vcunat commented Jul 25, 2024 •

edited

Loading

jtojnar commented Aug 25, 2024 •

edited

Loading